Scaffold DelMOSum2010_c10014982

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10014982
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4754
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024651	Metagenome / Metatranscriptome	205	Y
F058045	Metagenome / Metatranscriptome	135	N
F070097	Metagenome / Metatranscriptome	123	Y
F089432	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_100149822	F024651	N/A	MYNNATFVDKEQLKNLRKMDNFVKDNMVRFTEEVGMQVREVITKIIEKGHYYESEAEVLNMIANEYNQYKKEQR*
DelMOSum2010_100149825	F070097	N/A	MRLQYITKEKLKWINIFFDTIYKYYCSGHNKVYKWELQKELKFLNYMKEVGEYTHDDADKLNSIKELYKYIKNGQV*
DelMOSum2010_100149827	F058045	N/A	MEITNQLKHQLKAKEYSSLPQKIMMERWEASGRDLHTYWNSIEWDSSWLKHDTPEEKYAKDVTREFNRHPFRDYIEKPKEYIEL*
DelMOSum2010_100149828	F089432	N/A	MSAKKWLNDNEWPDLPIDSSAYSHYTYLSEVMEQFAKEYHEKQLVKYAIVQKSKFKKYL*