Scaffold DelMOSum2010_c10014454

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10014454
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4875
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008724	Metagenome / Metatranscriptome	329	Y
F029404	Metagenome	188	N
F040869	Metagenome	161	N
F048634	Metagenome	148	N
F066135	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_100144542	F048634	GAGG	MTPLEAIEETLEVLSQLQLNGSVKLEDSDKVSQCIQHLYTIRFNLKMKENQNV*
DelMOSum2010_100144544	F040869	AGGAG	MNMKVFEQVYNELSLLQQEDMDDLNIAEESLMAAMTFTMTNAPSVLNGLCLISNTFNGILAEYTLKDIQLKGE*
DelMOSum2010_100144545	F008724	GGAG	MSKIMNWMMSVEDFVNGYSYGGMNDFTVDEVVEDVGMYFKSGEAVKYARRYIEKQMEER*
DelMOSum2010_100144547	F029404	GGAGG	MTVDFVEVELGGDNWTITWDVSRRKKIKTTGEKYGLKYTIYSLTDLTPAQAYDIAMVQLEWLKKDQSYVI*
DelMOSum2010_100144548	F066135	AGGA	MNGLRIHSVDNIKVKREDYESFTTITVTVTDKTNKDFELTLFTDKGFIPDMEVQDDS*