Scaffold DelMOSum2010_c10014437

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10014437
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4877
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (46.15%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020913	Metagenome / Metatranscriptome	221	N
F021778	Metagenome / Metatranscriptome	217	N
F023859	Metagenome / Metatranscriptome	208	N
F025038	Metagenome / Metatranscriptome	203	N
F044529	Metagenome / Metatranscriptome	154	N
F048992	Metagenome	147	N
F054022	Metagenome	140	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_1001443710	F025038	N/A	MMVGTIGIVLNIVGADMPEVNKNNRRLFVEDEYDLYDVRKARPFWNDVCEVNGWDIVKDEEDFKEDYVCQINNELYFMELQIVGYWHNFDLSKISNVRISASKVKLLKEKGNGGLIFLNCVPNRFFAINVNQVTPEMKKDSVREQFYEIPLKTINPREVNVLDTNYCDCLENHLKIMQRSDGRMAFAQKDYNIRGKNGICC*
DelMOSum2010_1001443711	F048992	GAGG	MEYAADDINYGYMSIIMHINSEYTLIDKIENIREIDGTIEHPIFGKNKGGVSFSLFLRGFYTVFEAVLNYGDRFDVYVVNESGNTTMIDEDLDHLISLLHILYVNKKAEEDDLLNRALNPHTYRKAAKKMFYNEDPPF*
DelMOSum2010_1001443712	F054022	N/A	MKIPHFKKGLKVQFVEAATDFIDPPTQDILWRYGKILFQVKSKHGAISYFIEENKKKVKISRYLIFPVN*
DelMOSum2010_100144372	F044529	N/A	MLIQEIIYLGFVVYGVISLLMTMAYVSIKLDDKRLREKKRDLYDVTDFESRLKEGEILNWCNLFTDTHHFDAPADDGNFVCLKCWTYEGYEMEEV*
DelMOSum2010_100144373	F021778	GGAGG	MGMPKFLEDYVTVDTLISKMNNEYPECRLVAEMVDNGEDWVIFKSSFYENKEDTEPKATGYARQTKADHNSWFEMASTKANGRCLRVVFSESTTAEEMIGIAPSKEAAPKKTIEKELEKAGIEYEDVSVSQTHIINNIKSFAMDVANDNTANAANWYAQALGELDIPEAQLNIDNMKSVKNKLQDIATNLQKEGA*
DelMOSum2010_100144374	F020913	GAGG	MLGIFGRNKPLSVLEDLQLDYNPSEFRKVQYVLELEGFICSLDPEFNKNGNLRKAVNRLRTQYNALIYTEICNCSNKQYAKLKKNGSPYMHKAYIKDWAL*
DelMOSum2010_100144376	F023859	GGTGG	MKKVIVKFIGVKKYLVTDNADPQKIKDMFRKDLELLPPVWANNIEAVMYAKDEPEAEEE*