Scaffold DelMOSum2010_c10014419

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10014419
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4880
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (8.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008425	Metagenome / Metatranscriptome	333	Y
F024797	Metagenome / Metatranscriptome	204	Y
F032332	Metagenome	180	Y
F051263	Metagenome / Metatranscriptome	144	Y
F064641	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_1001441911	F051263	N/A	MNISNFESFGLNEAEKHEFNPNETAERLKRREQQNIDRFRAAQEREDAFGITYYKYRIAIDKIDLQKLKLQTQIHQLKQKYKK*
DelMOSum2010_1001441912	F064641	N/A	MDSKQTTNSRKDQNDIRHFAGSVKQFKDMFDDLADGKDTNAYDSPVRQGYDIHPTREEDIDSPHWDKDHKDEKTQNENHIPTFNTFLNEARTTDGLSKD
DelMOSum2010_100144195	F032332	N/A	MEINPGNGFSDDFIRSLLLTLEQTDFNEFMNLSYHVLMQSPASVLKRKDSINAKVESINGLIKYFEEVEEYEKCTNLQKLKTMLFLNTPNDES*
DelMOSum2010_100144198	F008425	N/A	MPTKDITYKQFIAHMDKGNKVYMKKPRSWQKVWFWWESKKDKWFLNKAFDQRVDGRVEPEPSSWITAKHMKSHMEYMNRQGYKYHIDE*
DelMOSum2010_100144199	F024797	N/A	MSEFFRTQMGRKLIDGDIPKLVHVLERIAIQMEKKNKLEEKKFILEEKIQKLSIRESRNK