Scaffold DelMOSum2010_c10014220

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10014220
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4927
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018810	Metagenome / Metatranscriptome	233	Y
F052203	Metagenome / Metatranscriptome	143	Y
F052545	Metagenome / Metatranscriptome	142	Y
F080495	Metagenome	115	N
F089399	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_1001422010	F080495	AGGA	MREALILALAFLAGCMLIGCRQPVRNYRVTTGSPDVWAAQPKQKVEFTVEWKQ*
DelMOSum2010_1001422012	F018810	AGGA	MIDPQTPIVKLGTKLKKGVVTGIFRGRIEVLGKSGVQTLTFATVEKEVLSNG*
DelMOSum2010_100142203	F052203	GAG	MKTLQAKPARTVRVILNTANRDRHQWAKIVEGSKVLHTGQPRYIKRVAKKKFNLDLMF*
DelMOSum2010_100142205	F089399	AGGA	MKFNEICLDAEMTRDEIYGLNVGNGETIFYTQEDDLFKQEQESEYRRLKRIKQENIENYRKQVDATGEFQYNGHTDEISLHSNQQAFVGAMAQEGLIEFDDKF*
DelMOSum2010_100142208	F052545	AGGA	MEKISVWAILFRVSTDSSIMIRTPFNAKEFDGNKEDDQLDAGAWCLGRMGGSWIPAVFICGTQSEAEGIKEELLEIMNKTQE*