Scaffold DelMOSum2010_c10013816

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10013816
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 5017
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae → Chosvirus → Chosvirus KM23C739 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001839	Metagenome	628	Y
F004629	Metagenome	430	Y
F004990	Metagenome	416	Y
F011253	Metagenome	293	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_100138162	F004990	GGA	MHGDPKKKCCACENGADLKEGNKYYCCDHYALYVLGKPMSQIEKELNNE*
DelMOSum2010_100138164	F001839	GGA	MDMKYFEKVDKDLINNRALNSHEKLIYIICKSFKNAPRGCRISHKYLMQRTGIKTQPTLIRCLDRLTLFGMLARKQIENGTCHYVFDKKTMQEYIQHNLNKRRKISLSKNRHNRNLNTALSSPNVINIGKVIK*
DelMOSum2010_100138165	F011253	AGG	MNDRKSEIDKIIKDMVKNKSLPYANAITKIKKDRKGYYQQKDIKLKSKSLSTDRFQQYLKDIQENDTE*
DelMOSum2010_100138166	F004629	AGGA	MIPNRLTVDQLDNYFQTATYVERYMPSPLNMKNRRTEMFLMIDRQYGISSDKDTYKGQDKPKMKIRLNGEQLQVYEFCILLLVKASEKDRDIISLRNFPYKRSFRQLKQFFLPSSHEKVRSDYYKALEELKSLYNSKGYKFICK*