Scaffold DelMOSum2010_c10013531

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10013531
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 5089
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005315	Metagenome	405	Y
F039351	Metagenome	164	N
F073764	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_100135311	F073764	N/A	LMIQGEAIRESINELKKDIKSEYDIPVATITKISTIVRKENLQEEEEKWEEIKDIVAACL
DelMOSum2010_100135312	F039351	AGCAG	MARIMVTGDSWSAGEWDPTLTPEETRAFAEKYSISRYLRDLGHEVAHAANPGWGDFVSLSCLMSHEIGFDFVVYVKTCATRDFKHLTPEHHRAYTTTDLFEKINLVKELEYKVLDQYKHKLILLGGIEKIEPDFNCYLKIPSITEFFYPDFEDTTIFGDYTHFEKYSDNDKRGAMKLWELWEHKHNFWKDHPEYFASATDQVHPNRKATKALAEFIHNHIS*
DelMOSum2010_100135313	F005315	N/A	MFIIACGDSFTQGEGLEKQTQAYPYLLNADIKNLAQSGASEYLITTQIEQAVKLKPDLIVVGHTSEYRWEVWDARNEIQQGFLIANHVLKNEKYYRNWILSEQILSNTRNTKEHKAAWHAAGMLYFSEIELVQRLWSGAVAKQILLAQRVNIPMIHHCCFPHLQILLSELTDDYIEFHLDLEKHKDLAPDGSHAGVKSHMKLANMIMNKLS*