Scaffold DelMOSum2010_c10012947

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10012947
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 5241
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017486	Metagenome / Metatranscriptome	240	N
F048584	Metagenome	148	N
F060810	Metagenome	132	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_1001294714	F048584	N/A	MQDYDLTKYCDSIAEEIAEDAANFEIAMEQAHESADGSEYVIYYAKAHALCQNCNIDQGEDFFSECYGGQHGKSYDEIACIMAYGEIERRIASRLWDIYQEREEEAA*
DelMOSum2010_100129472	F017486	AGGA	MNKIIITNAHAHGFAFACDTETQGQVFIPVHIAEGFDLAPGXEIDAVLVPNYQDKSDKGTPWQAVKLQRDSVSEVCEKVSLDKTQTLNQEALDAEMLTYILAGGYHTTAELADYFELDHKTAGNAAQRLFNSGKIAKADVFNRVGQQRPTIILWAASAKVFIEVV*
DelMOSum2010_100129476	F060810	GGAGG	MSIKVGLPGVTFNALCKITEIDREFIGSPDYMGVAQFWDWQHPQNTRLSRASVSARRKIHAALVKDGLDLNGDTGIHRSIISIVLDEEVKGYE*