Scaffold DelMOSum2010_c10012403

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10012403
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 5381
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (8.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024582	Metagenome / Metatranscriptome	205	Y
F025731	Metagenome / Metatranscriptome	200	Y
F036969	Metagenome / Metatranscriptome	169	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_1001240312	F024582	N/A	MKCTHNTLTHLLGAWDRLEVVGTNPDNYKSILTNTLLPHRNEFGKRQVKIAIEYRIEEGGARNAPYIYAFLVMYDQNGHRRSVIKNGSWGCHGEDMMEFKLWFAKKLNHANELQEQRIENAQESITDFLS*
DelMOSum2010_100124036	F025731	N/A	MLNSTDTQRKKAQMASALFNDVQLLGSAITCTASFDALSCDDQMRLEDLIGGDQ*
DelMOSum2010_100124038	F036969	N/A	MNTMFSTHAIRLAYGRTLMDGGSSLLTSDGYDFEVPYKGFMVGGVAGETKIPLDICDSHTFHSIWLKYAAEVRKLIKESKLSGVSYAVGTWVDDGCIVFDVSEKVTHSRSAYALCKERNEDAYYDVEASKSVFIEKDNDNA*