Scaffold DelMOSum2010_c10011323

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10011323
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 5702
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003693	Metagenome / Metatranscriptome	473	Y
F018479	Metagenome / Metatranscriptome	235	Y
F021314	Metagenome / Metatranscriptome	219	Y
F092017	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_100113232	F018479	AGGAG	MSQKISDLVNRVYREYLEPMDDLQSYTTLKTEVNASVTEIIFNGDLLTQEEEDAMDAGTIIECEQELMRCKSLDTVNNKVTVDRGVLGTTAAIHVADKVIKISPVFPRKNVFDAVCDQIKNLYPTLFAVETKSIVAKVGYVPLSGSTDNHLIAPIKSISQNTNFSAGSDETGTVFSGVSCELIDLPNPFTYTDDDGASQTITYSNNGPDNVKAIQFYSVASGHTVFVTFKKKFVTPTQEDDTLATVGLEDEYEPIIMTGVAAQLISGRDIPTATADYITDQMSVNTFPVNSASTIRNSLLQYQTALITQARKDLRARYPEPVTVNKIAYS*
DelMOSum2010_100113233	F092017	AGGAG	MSMLLILKEGRNLNIESIPDQPLEPSFPIVNPNNTANDGWFALGSFGQAIFATSLVEEGAA*
DelMOSum2010_100113234	F003693	AGG	MISKLALIDVSADNNDSLGVQTDGMLLCGVQFPAAMTGSAITFDFSMDNTTWLDVKETDGTEVSYTVSAGDVVRVDPSGWAFASNGYIRVTSNGTEAADREIVLHFRHS*
DelMOSum2010_100113236	F021314	GAGG	MCYSQTLVKIPFNYLAINVMEFNMLEKRWRKNMEKNTEQVEETTIVDEPTDNIKQLREEFKKLKAENRQFKADAMNSALSSLGLNAEKGIGKAVVKLYEGDVTVDGVKDFVAQEFGEVSSSEQPSNNLTSNVVEAQSRVEQLNKLGVNSNPQNIGDEFMKFVTDSNTKVGDSINAKLRMMETLKEDK*