Scaffold DelMOSum2010_c10011253

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10011253
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 5725
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (50.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004629	Metagenome	430	Y
F004990	Metagenome	416	Y
F008915	Metagenome / Metatranscriptome	326	Y
F011253	Metagenome	293	Y
F089429	Metagenome	109	N
F092873	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_100112531	F089429	N/A	DINIYSIFSRTYKKKMFPFMDFGEIGILKKVKTIKQVSNVYQFPIHKYYNQKRRVK*
DelMOSum2010_1001125310	F092873	N/A	MNNILNKKIIEIATKSGYKSEFVESYMIKKELTAKGFTFRRFALDQLLKKNSKKISDFIKDTYLPKEQKNKFAQISKILNPKKDAPKYYTENDLAFDLSHWFNSFSNGDVLVSPEYFVGNNVEISVVGSLYGNGQVGLHKGKEITKINIHPKYANCHAIESQIGSSRGYMRLFAPSKSISHAANNRFGFAQDKKSKIIWCGYIEPQSNGKFNILDKSYSTGKTYGTQVENISLSWSAEIKAEYYPTFYNN*
DelMOSum2010_100112533	F004629	AGGAGG	MIPTRITVDELDNMFQTATYVERYLPSPSMKNKRTEMFSLIDRLYGIGKDKDTYKDDDKPRLRIRLNSGQLQTYEFCILLLVKATEPQRDIIQLRNFPYRKSFRELRKFFLPSSHEKVRSDYYKALQELISLYNKHGYKYICK*
DelMOSum2010_100112534	F011253	AGG	MNNRKAEIDKIIKDMVKNKSLPYANAITKIKKDRKGYYQQKDIKLKSKSLSTDRFQQYLKTIQEEDDTN*
DelMOSum2010_100112537	F004990	GGA	MYGDPKKPCCVCKKGADLNERGKRYCADHYALYILGKSMSQIEKVLKKET*
DelMOSum2010_100112538	F008915	GAGG	MENNSITLDLYEMQSAAHLGILRCLESKKNKESWGYNYKGSLNDQMAKSISGAMGEVAASKFLGIKFEYHCNVGGVPDLIFKDLKLQVRTQLPKNNNSLIIRPKAKPGELYILVIDEAPNFKILGFVNSTFVLGQEQWKTTFGLDRPFCYSIPPDKLTPIELLKNGTWN*