Scaffold DelMOSum2010_c10010502

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10010502
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 5976
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (81.82%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003051	Metagenome / Metatranscriptome	510	Y
F003976	Metagenome / Metatranscriptome	459	Y
F004856	Metagenome / Metatranscriptome	421	Y
F015812	Metagenome / Metatranscriptome	252	Y
F022084	Metagenome	216	Y
F035272	Metagenome / Metatranscriptome	172	N
F051470	Metagenome	144	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_1001050210	F051470	GGAGG	MSNDNKWIHDYYDERWQHYYDELCKDIKDIGQVEEMADRMAMEDVDNLEMEG*
DelMOSum2010_1001050211	F003976	GGAGG	MSRTYNDYYFEKLDILATLEKLDMSVRFLDKWVDEPEGLENARYILEKNANRKFNWFDTNMVRELLEEEVR*
DelMOSum2010_1001050212	F035272	AGGAGG	MTYKQWCDFRELLNILHIEVESKLCDVKVEEAFDDVWDMVDEIDTTQEIT*
DelMOSum2010_1001050215	F004856	AGGAGG	MSDWIEGTKPKKIEARYSAYISWDLDELGIDWDEIEDWDLQRADLEITFKDGTKKVYENWQDLDIDYKHNFEEVLILDEDWNQVEGLNG*
DelMOSum2010_1001050218	F015812	AGGAG	MNKTLYKRLEDICAREYVVNKLSANKFRTFVDYLYDDIRTWDNPTEVSDTDVMYRIEEHLSHMVARILTNTHTGTAHD*
DelMOSum2010_1001050220	F003051	N/A	MKTKILKNKVIIDMSVSEYDDLFKYMDKLDSMLNTLQETNDLWLSDVHNLSSLRWDLTKLLDAEWNQDTYRYVKRGSK*
DelMOSum2010_100105025	F022084	AGGTGG	MKHTEYLKRLFNHIESKGYTVDCECEGEGITQDEALTQVDDAHIYIIDKDNHSLGWIYWTYWNDWDESISDYTLELEKILKLDEFIEWNVK*