Scaffold DelMOSum2010_c10009634

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10009634
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 6317
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001582	Metagenome / Metatranscriptome	668	Y
F002716	Metagenome / Metatranscriptome	535	Y
F004956	Metagenome / Metatranscriptome	417	Y
F005495	Metagenome / Metatranscriptome	399	Y
F042286	Metagenome / Metatranscriptome	158	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_100096341	F042286	GGA	MSGQFPTNPNFRSLNFKDNRPTLLNQTLSGKKQVRQIGAQYF
DelMOSum2010_1000963410	F005495	N/A	MLKWNRGGNTPTLNMKKFLITKDTIANGKKVFTGDVVELNEQTGHELCSYNKAEIYVEKPKAEKENRSVGLKTSKVKAPKTRAKK*
DelMOSum2010_100096346	F004956	AGGAGG	MKMISPNGKVSIEAHPSKVESLLNKGWKEEAVHSQDKIKPSSKKKSKDEVENGNT*
DelMOSum2010_100096348	F002716	GAGG	MSEYRMETEEDMSAYLDPTYGHGVSAVYVNNGSSTTINIILNNEYIEQDEGIGVEALQPVAYCRSIDIPSVSYGHALNVSAIKDTDGNIIKAATNYTIVNIRPDRTGFIALELEEV*
DelMOSum2010_100096349	F001582	GAG	MAIESAADFNSYTDIQTGHGVTATFFEVQQSLWDDFPLIDTLFDIDSGFSKNINIIIDQEYFNIEAGSVPVAGYQPRAIVKASDVPYISQEDKLLINAITTNRGNVLKPATTFIVRTVEPDNTGLVELVLEEE*