Scaffold DelMOSum2010_c10009203

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10009203
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 6505
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (85.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014903	Metagenome / Metatranscriptome	259	Y
F050478	Metagenome	145	N
F070149	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_100092031	F050478	GAGG	MKIKRVSRYTFDKDGHPINKRGKRLTNKITATFKHSPNNAGARVNWIHFEKEEVVK*
DelMOSum2010_100092036	F014903	GGAG	MDNDITNIRYVEMTYDHTITFDIDEIANANNFIPSDIEEVECGKWAKLNITLKDGRVIEEDGCFYTAIPDLKWAEREAFYDGSYNELI*
DelMOSum2010_100092038	F070149	AGGAGG	MSTNNMPSIYQIVDDVCARDFEILARLSTNQRDKFVNIIYEDVLAGDSPEEITEDRIYDYVEEFITKAISVSIDDVVDFNL*