Scaffold DelMOSum2010_c10008476

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10008476
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 6854
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (18.18%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000126	Metagenome / Metatranscriptome	2021	Y
F007827	Metagenome	344	Y
F065113	Metagenome	128	Y
F074047	Metagenome	120	Y
F101134	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_1000847610	F074047	N/A	MSKNKIIEETVETIIDNIEEKLVDYMFELGDYSETNNKFYSDKEELFSQVIKELNNRLKNK*
DelMOSum2010_1000847611	F065113	N/A	MYETLEHWKQYKQEKELTDNSTKLVSEYDKESFDEWLNELVKKNGTTEY*
DelMOSum2010_1000847612	F000126	N/A	MVQQSINMRDYSITRKEGEWYDTRVVDSYGNKYQNYFESASEANEWVYFVWSKEDWFNSVDSQELLYKAIENCKRLDKNIKVREI*
DelMOSum2010_1000847613	F101134	N/A	MKKKLTKELESNVAELIMVTMFIMILLSSCGTGYCVQSEWATPLKKQYSRTCN*
DelMOSum2010_1000847615	F007827	N/A	MKLTNKQKRSVKRQVQIDQGVKTPGTRVFVSKKIYTRKIKHKNK*