Scaffold DelMOSum2010_c10008290

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10008290
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 6950
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005178	Metagenome / Metatranscriptome	409	Y
F010471	Metagenome	303	Y
F021206	Metagenome	220	Y
F044198	Metagenome	155	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_1000829016	F010471	AGG	MIQLTLTTNKKAHAEYSDIEISQILGLLPLWVAEYVGNDDDTDIVQFMTDKYGFGKLYKFDGKVNSGGDYVSSYEEDSDLPYMGKMITKNGYAYFYEHAIVALPQSDKTHFITRMD*
DelMOSum2010_1000829017	F021206	GAGG	MTVTLNQILAMENVLATRKIPSDIQAMAKTKRYSNSKQKVITLGEQPLHYVLRILAKERLDT*
DelMOSum2010_100082902	F044198	GGA	MQPKDVPCHIRIKYEPTQMQPGKACRLHGKDFKSVVDAARYFNVNYSWAAEQVRNGWNTEDFPKKKRKNYG*
DelMOSum2010_100082904	F005178	AGGAG	MMFVLVWMQLFSTQTVEHYQLGNYATIEECQIELSKAAKMVTHKSETVACLEVEVQQ*