Scaffold DelMOSum2010_c10008127

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10008127
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 7042
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042623	Metagenome / Metatranscriptome	158	N
F051535	Metagenome / Metatranscriptome	144	N
F098206	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_1000812711	F098206	GGAG	MMNEIVLEINELEEAVDKLKLVDAPEAFVAIRTIDVMIERKRAQLEAFERTADED*
DelMOSum2010_1000812712	F051535	N/A	MKIDFYLKWIATGTLIVGCFVNSAFPSLFPVGPLILGAGGIIWLVVSCMWREWSLIITNGVMTAVGILGLAFYYLS*
DelMOSum2010_1000812719	F042623	N/A	MELVEEYTRVIKVEEGYPYAKTLYLPTGEIDAVVDWCKQELSPGWKWQILTSSSTDTPGVYSFFFLEDCDFFAFLLKYG*