Scaffold DelMOSum2010_c10006231

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10006231
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 8302
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (94.74%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002221	Metagenome	581	Y
F010878	Metagenome / Metatranscriptome	298	Y
F024204	Metagenome	207	N
F092098	Metagenome / Metatranscriptome	107	Y
F094536	Metagenome	106	N
F099546	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_1000623112	F094536	AGG	MRITVKDNLKDISKQLNKDLNQKEFNKIMARAMNYTGERTVNAERNSLENKLLNARPQTIKSVVISQFAKPQSNKLAMTVRVKDWAAKYLHYIYTGQSEPARRQGYPSPTTDGRHKKGKYGNIMKLSSKGGLLSKIDKTADSQRKGSRFQGVPKGEGSKAYGIWERQGKKGREGLKLLVAFTPFIQHRKFIDFYKVGEKAIKNNLHKEINKQFARHLKRR*
DelMOSum2010_1000623113	F099546	GAG	MADKKQIDITKLKRQISKGKSLNEVSVSLGKSKSTILKLANENGLKFENKSHWANL*
DelMOSum2010_1000623117	F002221	AGG	MKTYLDKNLEGKLKELRTYELETYEKWGSRRRIFKMVGVQFEIKFCRGEQMLRESLESDVVRKKIQMVDMMHRAFVALNIKCEESGYIQIQPSTKCFNFDKKTALICDTDEQKPLLVKIHKDEPDMMIFSIEELLRCIPKDFMEAKQILSRLDKSVNFKRIDHG*
DelMOSum2010_100062313	F092098	GAGG	MKYTKMKITIDIDTSNSSFWHECEDSTQIFIHEEVERILKNIIPKIEITDHGMAKDINGNKVATFRVERNNEEY*
DelMOSum2010_100062317	F010878	AGGAG	MKIKAWHIGILWEDDKEEVLAVIPNWVAKRVDEFLDELEEEYDE*
DelMOSum2010_100062318	F024204	AGGAGG	MSNYTYTEIVEEGITVCASCGGANINLNKGMHKQDKNKTLDHCFDCDFAEGVTTCMPNDLHFYQEAKETLNKLQEVQPQ*