Scaffold DelMOSum2010_c10006141

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10006141
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 8369
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (45.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001668	Metagenome / Metatranscriptome	654	Y
F009330	Metagenome / Metatranscriptome	319	N
F009856	Metagenome / Metatranscriptome	312	Y
F048232	Metagenome	148	N
F072209	Metagenome	121	N
F091789	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_100061411	F009330	GGA	VTLDGYLSRNYDDLLQAAYRIAGKDGPDLLHEVILQLYQTKQDTIDGLLERDQMKYWVLRVMVNNYNSKTSRYHYKWRKDIERRRKFARHIVDWWDGDGVAAHRDELLTHIEERLADLPWFDAEVFAIYFEEGHTLDSFAEATGISRHKLYTTIRRVRKEIQG
DelMOSum2010_1000614111	F091789	N/A	MIELWHYRRPTWKQIKYEWGDLMRSKGLQQINREPPTGYEVAPDLITEQVEGDGFVIYPKGYDPREINHTLSSRASIYGNRYCGTLNSF*
DelMOSum2010_1000614119	F001668	N/A	MATVYLPVQPIEGMDSAERAEALDAETWRLRRPLSLQSPQDVTKYYYPRITHPETGQVAIVGDTTEEVRISPEVDLTNMLALLPEVPQEEKDGLVMFIDANRGGTVAFGQLIPSTSEQLTQEEAEALGWLPDPIEP*
DelMOSum2010_100061414	F072209	AGG	MVRAWFLAELGRLIKFVDATKTIQDNEELSETARALMEEFPAFKLEEFALVFEGIKRNKFGPMYGRLKLGELMECCRKWEETRAERILERKHRPEHDPYQRHSGTREERKAILVTVKDLIDLGQIKPPE*
DelMOSum2010_100061415	F009856	N/A	MKYWFDTDDAQRWGLPAAAVLAHLKYWIDRNTSAGEEPCMTQSISKMQSHLSFLTFDQIRRALSKLEKDGVIYRQGNGFDRRHTYCLAEMPQGRGEIATTMGQDCHNDVAPLPQVHIETNTSKRTKKDAREELEYQRPTEEEVIEYMEDRGAHDMAPTLGPEFWNYYEANGWMVNGTPIAKWKPKVNQWINRERKNQSNDRRKGFNPSGFTPDGLKDFIANG*
DelMOSum2010_100061416	F048232	GGA	MEKPLPYEERVARIMFLREHRRNLLRDYCDETMPKREKNKLRLEIAKVQKALKNLDPDGMFPP*