Scaffold DelMOSum2010_c10005873

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10005873
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 8580
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (35.29%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005934	Metagenome / Metatranscriptome	386	Y
F037985	Metagenome	167	N
F042011	Metagenome	159	Y
F057750	Metagenome / Metatranscriptome	136	N
F061354	Metagenome	132	Y
F084740	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_100058731	F057750	AGAAG	MTKENYLFESTREKAVREAQAVVDFMVAGKVKVYTKYCDESRAWYMIGEYQSYINYAGKPKGIAMYKSEKMDRYYDVSVFAAFFKQRAAYMNASYYWQIQARENNIHPAMFKGWRDSFKRTTSDMVSA*
DelMOSum2010_1000587313	F084740	N/A	MYRLTVHVTGVPRAEVRTGRKIKNASGKWVEEVKQKIHNVISYECKTRTEVAKKLGQIRNKYTILKGIAGQHKVSKIDKEFIQVSNIK*
DelMOSum2010_1000587316	F005934	N/A	MIDKKYYIDKGFELYAVMTASDKYTQGIDILYPSTPIKSDNQPAVYILTDKSGKLLKIGETQNLTSRFYKAYRCISNTTNNRIRKFIKEQEDIWVYVLPLPIVTEKILGYKCGTSYVKGLEYHLLKEYKDRYEKVPPLNSILS*
DelMOSum2010_100058733	F042011	GAG	MKRKQQYETSAAIAMIALIAMVVSLTINIAIGKSSIPEEAIPPTAMQEYSYEWYPTPLEQRKMDSLYAIDAATKADMDSIKDLIDAILIKLE*
DelMOSum2010_100058736	F037985	GGAG	MEKITTASKSQLRLRFIACVYPIAYMLVWPLVYGILPAYSNYYIFGGMYFTVATSMMAWAMYLHRDIKWSVPAYALVGVALFDCVDYWMLHNIFAFIFFLSSTYLMKTDKRFDWLGDISVTWYVLLVIPGGVFWFEAIQAVLISWFHMSYVRRLWRVRTGKE*
DelMOSum2010_100058737	F061354	AGGAG	MKVMIWVTESNIELLNKGEVIQYWAREPGDALNVMQVQISYDEFIRLRDNQPEHYVTRDHMRFINYSGMQDDNYYTNDNPGAYDEGHGVED*