NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold DelMOSum2010_c10005290

Scaffold DelMOSum2010_c10005290


Overview

Basic Information
Taxon OID3300000101 Open in IMG/M
Scaffold IDDelMOSum2010_c10005290 Open in IMG/M
Source Dataset NameMarine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)9113
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (95.45%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location
Location NameMicrobial Observatory off the coast of Delaware, USA
CoordinatesLat. (o)38.84917Long. (o)-75.1076Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059009Metagenome134Y
F074736Metagenome119N
F086825Metagenome110N
F098879Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
DelMOSum2010_1000529013F059009GGAGGMKDDELPDCYVQANDDYYVCYVMEYNDHEHMDIEERILGEILEITRRCRICGQCDVYYPV
DelMOSum2010_1000529014F086825AGGTGGMYIKESYVYTLPADMNDPEGPTRWVGCSSGDCGYERTADDSSYMIRMKPVLLRMFKVNGRQVCEGCLKEWRASITEWIE*
DelMOSum2010_1000529022F098879GAGMATKKTAMFTLTERVTISAANTTTFASIDLGSYVDVGDRQALQIHSVDFIHQGTTAVENFPQA
DelMOSum2010_100052903F074736AGGTGGMSRTVMFDKVMRGGSFTYTASGTTWSSDGPWEYIDSNVLYSQEEIDIGGMTTTQEETFYPEAATIQNSPFYTVPGVVLRDPGDPDSGLVPYGALFEYVLITESPFKVDKWVADQTYTGDGTSWIPVYSCPGIDPRRTTDQATTLGFDNVLYGRVQMIVHNSSLPQQAGVVYSTNEFGSMTPTASDRLYVTRFVVIQPLGGQNIPNGSGIQLPHMRVILVGSGKEENDLSYIMRLRNSYLLQQDVN*

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