Scaffold DelMOSum2010_c10004524

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10004524
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 9999
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (22.22%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061838	Metagenome / Metatranscriptome	131	N
F066233	Metagenome / Metatranscriptome	127	N
F068848	Metagenome / Metatranscriptome	124	N
F080617	Metagenome / Metatranscriptome	115	N
F103276	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_1000452415	F103276	N/A	MGNSMEKFLNKTMSDNKIVDMYTEVRKWLQSEGYTSITAQSISKAPHNIFRLMDNLRNEVSILRDTLRRYGLLDSDEIYDDWIKNRLSKVDKQYPLIDERND*
DelMOSum2010_100045242	F080617	AGGA	MEDNKLKWSLEKLLNTVGRNLAMNYYGFDSEYEVVSIIDEKTGEEVTDFNFGDTENYTAIVRSKEILPEIFDVKIEPLFRYGKYAQPMDLQFNLENLTKYISPNQIAIQLVGPEWKPGENTYRSLQSFEDKWGRSLDRDANDFKANPDAWIELNNGSVVDKLTGDSFPLMFNGLIDKTEVWNIARVDDDEWWGSLTDLDKERLSDNFS*
DelMOSum2010_100045244	F066233	N/A	MELENSLDGELKVEAQEKSEIAIKILDALVFNKFGGIEYSMKTRKTRANSYSNPTAYPFYFEFDVDVDVDKTFEPSPTYDKGYEDFIYEIGDHIGKALRYVNLHDYMEEPMFTYVNDELVDNEIDRLENKLILYLQSQYEGLSYDSIREADIGYYFYKGETDNPYMRVEYVGQPPIRDGDRQSTDTIEEREYFSCEDLYDIMSDLFDRSPLSISYDGENYTCQ*
DelMOSum2010_100045247	F061838	GGA	MSDMFNKVMPKSYDDFAKYSNMVMDHNVLDGKIKSIELDFEPSKEPIKYGDYEMIQPGTLVIDVILNTEGFYEISDSVPAIQDAFKLRPELEADSFLEFNGYEFIKNILFPYISQKFLRLMGLSLGDVPYVDFNLINHRGETILNYDEDLDTFIGSENSSVWKKIS*
DelMOSum2010_100045248	F068848	N/A	MVMSIDTQYGMLFKFMNQSRSNYMGLDLTYNFELLPENRISVDIFAEGKFDLPIRTKQMFRNMFMEFFVKDSKYFNIPKSSVGLLDFNNISLNGERLGDRITMDNNFKKDLVDIDGKLKKYYSIDLEDNPQGSFKLESFDNDLKSYIDLIDEDSMMYTVNIDDTKKITLNGNEFNRNTIVDFLDSVDLGEDNSITRPTKQQPFTRKVDPDAIFESISNCVWENSVEGDGTSLGLFWDKLMSNGMNYQNYFMENMGMLSVVNLNSYDGMFNDNMHNYNTESQSEILSMFVGWLESNKGKYKL*