Scaffold DelMOSum2010_c10003579

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10003579
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 11537
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019650	Metagenome / Metatranscriptome	228	N
F022458	Metagenome / Metatranscriptome	214	Y
F052204	Metagenome / Metatranscriptome	143	Y
F068870	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_1000357913	F052204	N/A	MDIYQETSTKIDFSKGLEITPIIVFEGVELKSKTFSNKTHQIEDLLGYITYNENGGCDVYL*
DelMOSum2010_1000357915	F019650	AGG	MIPKIQLYAKTIQPLLFWLKDNPDDKDIKYTVARLLRYYSNTPKMLELPYMYSEAALAEAIKLEIPEPEERLKWVTWKEQTNKSGLMDNSRKNGIFHLEHIVPISQIAKELYELENIECVKCIYDILIDNFKIAWILKTEQKLLDSINRSGQRSPELLNHLNIFIKGYNL*
DelMOSum2010_100035794	F068870	N/A	MDSLTSKPSCINDLKELVKQLTDRDVNIKNHLQSIKSIIADKSIKTDAIKIKKIKQILKNG*
DelMOSum2010_100035797	F022458	N/A	MINDWLNQNPDDGFNPNDHDIEMDEIAKLHAMADMKDDQELWARDQANKFYNDFQSLDIADSIIAVDSLIKTKVLNIDQVNVMLDNMIKVFSIDEEYEKCHICNEIKKGLGNAKI*