Scaffold DelMOSum2010_c10003557

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10003557
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 11579
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (31.25%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005364	Metagenome / Metatranscriptome	403	Y
F057678	Metagenome / Metatranscriptome	136	N
F061281	Metagenome / Metatranscriptome	132	N
F083272	Metagenome / Metatranscriptome	113	N
F089408	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_1000355712	F089408	N/A	MLRKKYQQEEPDLIDELLNKGRVTAVLSIALEGVSKITDHYIYKVHLLDNGTEKTIPVIAIDVTQALAKLEPHLNIGIPTTTLKWMLGTDRNVVATNVNL*
DelMOSum2010_1000355720	F005364	N/A	MKKSDLKNKLKSIVKEEVSSLLAERDYKYGGLLDPEDFDPIDPEVHIIGFGSMTRSALRQEIVRRLQGALKTAKDAATGGNNSYDKFKSLEGVLEPNGVLQQQLKAEREISQQMEELRSQGGRRAIPIPKQK*
DelMOSum2010_1000355724	F057678	N/A	MVEYEVNDKVVFRFNNVNEVAVITNVRRHKKTITGYDIRSEKGSGYVIVQVDANLTTRQRNKRVEYPLIDSKLTAAWIGSDSETNLFAKENVGHTRQNFSKDMTLLLDGEGSGCVQHFERHNDLIFPTQGPRSF*
DelMOSum2010_1000355725	F061281	N/A	MNKFQKKVLKQFPEAYVESSATGLRIINDDRYLAKEFYMPDTTCEDTAWEYAALACKMAQNFNRAHPSRMDLSDVENKLARINRRKRNGRRVK*
DelMOSum2010_100035575	F083272	AGG	MKKSQIHKIIREEFVNILREQTLVTEAFQDPIARMLSKDRSLGDGWFKFFNAMSNSFDIAWDQVPKGAFQRVAPGSPLTKKGLAIYYIEGNKENPFATTDRYGYSGNKTLRGPAVLAATIDNKITYGGGRGEDARVGGKSRRTEPVGKNVRGTMQVNKLKDIADVVYVFDLESYRGGTTALKSARASLKLGKDKFTDHKAWKKANLSRYEGILRSRIGTRDQVDRMVAEIVKIANQAVTDAITGPDRRLDKYGDLQAIVAGQDVALEDVTTSMSNALKDYKRYIDYENEEDRAAKAGGYQGGSYYGEKKKAYALELKRYLKGFKTGKIKRY*