Scaffold DelMOSum2010_c10003358

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10003358
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 11939
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (52.78%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020603	Metagenome	223	Y
F028310	Metagenome	192	Y
F066804	Metagenome / Metatranscriptome	126	N
F086161	Metagenome / Metatranscriptome	111	N
F096038	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_1000335810	F028310	GGAG	MGRKSLDEIYEEVDRESELDCYDREDIRLKDNQEPYAIVGKSHSGNILLKVGDELGYDVTKSLTFPEALKLIKELTNAIIERYTK*
DelMOSum2010_1000335814	F086161	AGGAG	MSNHKTFVLNTEDTFEKLQEASEKKAETLFKYRKLEKSEKIILAKLKGDLRLNKDKVSQIELTDMAYKEPKYKEWLIAYTQAEREFSLAKDYYNNLISLKDMRITEESSARYLINKKI*
DelMOSum2010_1000335817	F066804	N/A	MPISYLEFKLNKEIAYEDTFENDKKIREQYDEYIKQQKGEEEKMLDKPIYFNVYKNDSENPKAPTYSWSGFTFKEDIVIKAGTKVDMTFWGNSVSQKDGKPNPHLRISNHVPRADKGGVSDRDINYPTKEQVAQQDNNYLDDDINF*
DelMOSum2010_1000335825	F020603	GGAG	MKKIMLLFIVSIILSNCSTYKPLINPETSRDKFDGNNIAGGYWKDLQACNYIFDQNTGKLAILPDKKGFITKCMNDYGYSILR*
DelMOSum2010_1000335833	F096038	AGGAG	MRKKRRDIVWHIYHTILAVELGAVAIIEFIELMYK*