Scaffold DelMOSum2010_c10002218

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10002218
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 15098
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (78.79%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011340	Metagenome	292	Y
F029471	Metagenome / Metatranscriptome	188	N
F065859	Metagenome / Metatranscriptome	127	N
F073589	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_100022182	F011340	GGAGG	MSADPVTLAVISTSIQAVGTYQGIQAQKAANKAAIRSYEDEKKFNELKAIQDSNNVRDEAKKKQKINKAIVAGAGYNDDSRHFLSTQSEIDRIATKDIGNIRINMMRGNQKMDTMIYTTKVMGKAQEFGGYASIASAGFKTAAYAKQYEAGKKPRGQYFTDDDKDKIG*
DelMOSum2010_1000221820	F065859	AGG	MSFIHTISQKDRNRLRTIVKRVHLKNYPTHMITDYEADKLVEAFGEETIYNLLKSNVGVNVD*
DelMOSum2010_1000221823	F073589	AGGAG	MNYKVNIWQGDNFKREIVYSANNDIQAIQMASAATPDGCRSTFEETNEQEKQCPTVKEPMVQKEEDQAVA*
DelMOSum2010_1000221826	F029471	AGGAG	MLASEIDSADYSDSRLDSMDTVLDSVDIKVGVKAFFENVITPFAEQKDWAMLAEWNANSIIGCFQRHLDQCIASSDKTRDLMKNAMREDVGNEISMLNVDKLIFRRDAQDLNIKRAEMIVNELLLTYEVAFGKKFMPRAKSSGKDVTKQAQMKEYNLARLKEAMQK*