| Basic Information | |
|---|---|
| Taxon OID | 3300000101 Open in IMG/M |
| Scaffold ID | DelMOSum2010_c10002218 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 15098 |
| Total Scaffold Genes | 33 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 26 (78.79%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Microbial Observatory off the coast of Delaware, USA | |||||||
| Coordinates | Lat. (o) | 38.84917 | Long. (o) | -75.1076 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F011340 | Metagenome | 292 | Y |
| F029471 | Metagenome / Metatranscriptome | 188 | N |
| F065859 | Metagenome / Metatranscriptome | 127 | N |
| F073589 | Metagenome / Metatranscriptome | 120 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| DelMOSum2010_100022182 | F011340 | GGAGG | MSADPVTLAVISTSIQAVGTYQGIQAQKAANKAAIRSYEDEKKFNELKAIQDSNNVRDEAKKKQKINKAIVAGAGYNDDSRHFLSTQSEIDRIATKDIGNIRINMMRGNQKMDTMIYTTKVMGKAQEFGGYASIASAGFKTAAYAKQYEAGKKPRGQYFTDDDKDKIG* |
| DelMOSum2010_1000221820 | F065859 | AGG | MSFIHTISQKDRNRLRTIVKRVHLKNYPTHMITDYEADKLVEAFGEETIYNLLKSNVGVNVD* |
| DelMOSum2010_1000221823 | F073589 | AGGAG | MNYKVNIWQGDNFKREIVYSANNDIQAIQMASAATPDGCRSTFEETNEQEKQCPTVKEPMVQKEEDQAVA* |
| DelMOSum2010_1000221826 | F029471 | AGGAG | MLASEIDSADYSDSRLDSMDTVLDSVDIKVGVKAFFENVITPFAEQKDWAMLAEWNANSIIGCFQRHLDQCIASSDKTRDLMKNAMREDVGNEISMLNVDKLIFRRDAQDLNIKRAEMIVNELLLTYEVAFGKKFMPRAKSSGKDVTKQAQMKEYNLARLKEAMQK* |
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