Scaffold DelMOSum2010_c10001911

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10001911
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 16378
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (83.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004327	Metagenome / Metatranscriptome	443	Y
F007414	Metagenome / Metatranscriptome	351	Y
F020791	Metagenome / Metatranscriptome	222	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_100019111	F007414	AGGAG	MATMLFXGLVSLLGNPSPSKAFEKEMLTYAKTEYGNDWQYAYHYMLTHKGKGPKMGVTY*
DelMOSum2010_1000191125	F004327	GGAG	MERTFIKIGTKVLTRHGEAKVTGIELTKDGSKYGIGMDKIFVEDKDRCVFDMDNGHWSYGYQVSVI*
DelMOSum2010_1000191134	F020791	AGGAGG	MFKAIMFIAIGAVGAYLYMNPGDIDGATEMLKEGVNKGATVVQELTEK*