Scaffold DelMOSum2010_c10001881

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10001881
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 16505
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (77.78%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002747	Metagenome / Metatranscriptome	533	Y
F006347	Metagenome / Metatranscriptome	375	Y
F028003	Metagenome / Metatranscriptome	193	Y
F059330	Metagenome	134	N
F077798	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_1000188112	F077798	N/A	MTDIGKKFRMIIENEDLFKSNPEAMLRLKYLVDNKKSFKNIKKEEIEALYIYLNRHNIPQS*
DelMOSum2010_100018812	F006347	AGGAG	MIDRIEQLIDTLEQEINDGYNTLPDYQTNDEGKTYINGAQCTLNELQKQITELKQGLKLGKNFSLLGENV*
DelMOSum2010_100018813	F002747	GGAG	MAKDQRYFVDVCLEIYVPDQGCGDNALINESKDANWFANEICSQIPKVINKNFKYSERPYSVNDATFVKQQRG*
DelMOSum2010_100018815	F059330	N/A	MTNKQIIEKTKDWLWELTEPNEKFGGFGICPFLKKELTNDDMKFVIMKSIDGKAFKKELDDWIDQNKYNSILFICLGDIWEHIGRKSYQASLQKIMKEHGYKDYKVLCFSPYEDKTAAGVKTRANAPYFLINIMDSEELGKAHKKMIDTKYFDNFTKDELIDIKIYGKKTKKALDINKKN
DelMOSum2010_100018818	F028003	AGG	MQVNQASGFDKYIIMCDKGQNKLTSDYPSYLKFKEVQDALVRISQTPGQTYMFGGEIHQKGMTCAQADRVLDNIFNCKTNMEMIGFIVKVARQIGFHEITPPRKIRWHQL*