Scaffold DelMOSum2010_c10001030

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10001030
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 23116
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (84.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019558	Metagenome / Metatranscriptome	229	Y
F030416	Metagenome / Metatranscriptome	185	N
F048637	Metagenome / Metatranscriptome	148	N
F095316	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_1000103023	F095316	AGGA	MTNSATTTTTEGTTISALVKEGKALASIWKQTNSLKHTIKASGFDTRLGKLLQELKAQSTLDSGQISRQTLTMYGINIIDRRRRSEALWFVENEVECRKFIEDGKFKGTSLTALQKAMRDAEKASEETTEGETSNVGQSEAEQPKAETIKPRITHKVMVNTILAQTELNELDLEEIITDLMSALEQRQAA*
DelMOSum2010_1000103024	F030416	N/A	MRYKVSTVKASVEQDMLDTAMAQFHDLAQEINRPMLDTSIDNTFTPEELKHRIPTLIHDSGWKDVENDS*
DelMOSum2010_1000103030	F048637	AGG	MSVYMIYQRTNVDSERINSMPTSVYAKTYFKLGMLTVNEADDAVHDGLYHDMYEPTMIMHDVETRDRTPFEAIFDEGNGYGDGSITTANIRNRPSMSVGDILMDLTTGYAHVCMPIGWHSLDLELNLTTAA*
DelMOSum2010_1000103034	F019558	AGGAG	MAVTAYDVTLEIDEYKSVVKLDTTYPAVSDWVTATEFAIHLALYEHPDAHIEFVDCAEYEHKEYSKYGHIHAAPVVLQ*