Scaffold DelMOSum2010_c10000922

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10000922
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 24548
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (87.76%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048335	Metagenome / Metatranscriptome	148	N
F063646	Metagenome	129	N
F082524	Metagenome	113	N
F100946	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_1000092210	F082524	AGGAG	VPKVLISEYWIQDNGGVVRVYKNGSAYELIAEEDDGTVFLHSKNIXRLETAENRAEEIALLV*
DelMOSum2010_1000092230	F100946	AGGAG	MQNVWMVWQTVDFGQDWMMGVFASADAANAAMDGMFADWMSDRDMTAAQFAASQMDDPFFVTTEDVQGG*
DelMOSum2010_1000092242	F048335	AGAAGG	MQLFLKSLTKSFSNAIKRARMSDEERYLSDSTDLVDLEGRQKRIMYGQAPYQINGRHWLDVQQYQ*
DelMOSum2010_100009225	F063646	AGGAG	MIAYVAETYLSTKNKWLELKTLSTLSEAEEFLCEHFDSIVTSLDNGDCGDMSVETMMKNWGKKFRITEMEVV*