Scaffold DelMOSum2010_c10000878

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10000878
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 25269
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (94.12%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024653	Metagenome	205	Y
F050685	Metagenome	145	N
F066153	Metagenome	127	Y
F101909	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_100008781	F066153	GGAGG	MEDVQKTFMDWLDTCPVVEHRSIHGVQEDSATWIYTVDFAVLKEDDDLQPQRG
DelMOSum2010_1000087824	F050685	AGTAG	VKCAKPIIALEDAGLIRKVIAYYIKYASPPDKEVEEKLLNLFHRLGRLEK*
DelMOSum2010_100008783	F024653	GGAG	MSRDINTIPTVPRHIVSYKIYAEWNDNPKMVQLDHEMDSDIENSFNEWLQQIEEEENAR*
DelMOSum2010_100008786	F101909	GGA	MMMTEDVQEEKKNYHKRRGMSERILDVLSDGYWHSVQEVSKRIGYLETGTSAGIRTLRKKNYGKKNVIGKWLGGVYHYRLEEGEYGETPLSADLDRDIPVSSL*