NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold DelMOSum2010_c10000536

Scaffold DelMOSum2010_c10000536


Overview

Basic Information
Taxon OID3300000101 Open in IMG/M
Scaffold IDDelMOSum2010_c10000536 Open in IMG/M
Source Dataset NameMarine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)32861
Total Scaffold Genes58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (12.07%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location
Location NameMicrobial Observatory off the coast of Delaware, USA
CoordinatesLat. (o)38.84917Long. (o)-75.1076Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001728Metagenome / Metatranscriptome645Y
F013571Metagenome / Metatranscriptome270Y
F014383Metagenome / Metatranscriptome263Y
F020796Metagenome / Metatranscriptome222Y
F024892Metagenome / Metatranscriptome204Y
F064116Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
DelMOSum2010_1000053613F020796N/AMIRETLELLRDKDWLIDDMDINIAKGLYEMPSTFKELRIKTKRKKLTNGR*
DelMOSum2010_100005362F014383N/AMANEIYDSTWWGNTIDTASSIGTSTEMIQGQFNMNNRQEVEAVKCLADAIHRIGIQDIQN
DelMOSum2010_1000053646F001728N/AMNDIEMKSTKEDHYRLFLNGVDVTGEQERSVFRHILQTIDNAIDN*
DelMOSum2010_1000053648F064116N/AMKDLLDFKNHRIEALQSKMFDLEQKIGILETYIFELTDKDCPEEYKKIVKNQLLKTD*
DelMOSum2010_1000053652F024892N/AMPYKRKKYSSSLHNVEYTDTYTKQMDSEGLSVLKWSMFDSPDTLGSGKMFMESEPVFILDEVLKKERINAFVMLGYVSKTYGNKLALPNNSGHRVGKAVKVRCINKIKRFKIIKGLIQYGIERIEVSNEFIYFDTDNYLKEPTFFCF*
DelMOSum2010_1000053654F013571N/AMEINLILLVPNAMMLGWQYYEPDDNFNYSEVNIFLFFGQLQIIWNKDE*
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