Scaffold DelMOSum2010_c10000376

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10000376
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 39098
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (9.38%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002047	Metagenome / Metatranscriptome	599	Y
F004866	Metagenome	420	Y
F005243	Metagenome / Metatranscriptome	407	Y
F006666	Metagenome / Metatranscriptome	367	Y
F020206	Metagenome / Metatranscriptome	225	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_1000037610	F002047	AGG	LPNTSAEDKDYLLKMNMLVKEDGLYKMTPDAKAFCVKLDNYFIKAKKKTDIQLMGKNFNDMIHTYREIFPAKKLPSGNPARNNVKALGENFRWFFETYDHTWDDIIKATRMYVNEYRDADYLYMQTSQYFISKQDKHRVKHSRLADYCDMIVDGVSTEDEHFKENVV*
DelMOSum2010_1000037641	F005243	N/A	MADVKNLNPDLQDKDPQLSKEELNARREEITQFYKDNIPHLTVQAEYEALLSDIDKSRAERLQAQLFMAQTAAQQKSDGEGASEDEIAFKEAMEKAATNAE*
DelMOSum2010_1000037643	F004866	N/A	MAIVNKVDLKLKVDIDVSIKYQILTYCFFNDTLLSNSDLKFLCELAKNNNVELTKFCINLVSQGIFKSPQSARNAITKAEKKGLLIKKGNNKKTIFLNKDMNVQVDGLVLLDYKILGNVPQVS*
DelMOSum2010_1000037644	F006666	N/A	MFPKSHKEFKKEIADEVGVHQQVVDDFISFYYAKVRRKLSDLSFPRLYIEGLGTFELRKNKLETAILKNKSLLGNIAKRTYNGYAKSEDVKLNIKQMEAALKQIHKDIITKKEFRKNE*
DelMOSum2010_1000037655	F020206	N/A	MALDIQRQNKTYEFSNSSVSKILASKAVGKDILARDHADDTAAKAAGLAKGDIYHTTGALKIVVG*