Scaffold DelMOSum2010_c10000266

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10000266
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 46514
• Total Scaffold Genes: 75
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (29.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005287	Metagenome / Metatranscriptome	406	Y
F007770	Metagenome	345	Y
F016956	Metagenome / Metatranscriptome	243	Y
F023615	Metagenome / Metatranscriptome	209	Y
F025258	Metagenome / Metatranscriptome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_1000026649	F005287	N/A	MKSSNIVYSEHGVDECFEYKNGSGRVPDGLAVGFVKDFPEGILKDLFLFDDIIYSNYDHDYWDNLELENDVDRLILP*
DelMOSum2010_1000026670	F023615	N/A	MNRFELEDSMSNLHQISEDIETIIYAIGDSPIKHTEDQLLNMLIGMKQLHDTRYQKMWDTFEQLIQNGTISDKNTEGL*
DelMOSum2010_1000026671	F016956	AGAAGG	MIDAIKTWQAPKKAQLAIIDLAITHIKKVEGNPDVKTEGDNFDYWNSYELEDGTYIDYNIHCGDDWCVLKQDGSGEYEYTDPSTWSWDVACYAVDPPNEEREYHQIDTDREQYLFSYNKSYGNREVEFENDSL*
DelMOSum2010_1000026673	F007770	AGTAG	MSGEGHTTSFKRIAQTTKSNEQLLEEFKRLVYSSKKVMSHMKWYGKEHSVELVEHGDEEQPKWRQESVAIKDTFEFYISTYESWGKDSNYYECHKTEGSFVSLAMKFAEDNNLMYFPDGFPAEWIEQEIIDGEKNWNHFNVKSDDKNIDKICDVWYHYGIMKLQAFDEKVESQLWQDTKAEIKQLMEHKYAK*
DelMOSum2010_100002668	F025258	N/A	MSEYKPKPFTKEISEQMKLDIGTPFDEKRTLCNVLKLAYRCSKEESYNLEAVRALLLEGFWMGQRMSVKLSSDKKNELSDEQLKQQEDEDPFSVDWSNLDGRNVARGNWD*