Scaffold DelMOSum2010_c10000026

Overview

Basic Information

• Taxon OID: 3300000101
• Scaffold ID: DelMOSum2010_c10000026
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 127431
• Total Scaffold Genes: 152
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 140 (92.11%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.84917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035970	Metagenome / Metatranscriptome	171	Y
F054354	Metagenome	140	Y
F055213	Metagenome	139	Y
F061272	Metagenome / Metatranscriptome	132	Y
F064107	Metagenome / Metatranscriptome	129	Y
F079210	Metagenome / Metatranscriptome	116	N
F081232	Metagenome	114	Y
F095340	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_1000002611	F064107	GGAG	MSNQIKLTFDISDELLDKLLTVMAITSQQNALQGAMPMLMGAMGGKTPPPPPKGEEKPSMGFKMDDKK*
DelMOSum2010_10000026114	F061272	GGAGG	VEKFEVGCLVKFLEDFESETIPNVGIVLEVISFDELVGEDLGQGITWYSVLFGDIDMVVSSEMIILLS*
DelMOSum2010_10000026115	F054354	GGAGG	MNKFIDDGIKKGYEFLVIEPQECYNESIVAFDKGRLVYDTEQLMDCSRKYYEWEYETAIEWFEYNTLSLTYMEGGPLFFEEDEQFYLTHNDERVTLEVRNKILEDK*
DelMOSum2010_1000002614	F095340	GGAG	MNFHIGDLVKIEQGQGKNDIGIVLDYRSTGRFYPSTELTIKLSCGRTIRKDYKTVEKLGDNNDQETTEEKK*
DelMOSum2010_1000002619	F081232	GGAG	MIEIGTLVRLKFKSVRYSQYDLRSEKIERDEDKPVGMVIGRGYKGMNGDLIVKWIKGNAEIGHPTGSIAYFDKYSVEKIA*
DelMOSum2010_1000002622	F055213	AGGAG	MLHYGNQAPQVGDLYVSETQGRLHILVSYEFVYKDRVDFYRYYKSKLKRLDDGAITSWTKPQHEFYRKYKPLQPDPQA*
DelMOSum2010_1000002630	F035970	GAGG	MDNNWNIIMKTAQELAQEYHKEGWTGDCNDFTQASSSVSQELTNLEVERLWDEFKGEELISDNVTFTFTRQGRDKVITIEQTDNN*
DelMOSum2010_100000264	F079210	AGGAG	VIQKGDMVGFKMKGDYRLAIVIDDLGQGYPYGRYTGLLIGSDGDYIPLNETELTLLNTKAQVDGWERQKKLQKLLDKKKQTS*