Scaffold LCrCPGB2aDRAFT_c002003

Overview

Basic Information

• Taxon OID: 3300000095
• Scaffold ID: LCrCPGB2aDRAFT_c002003
• Source Dataset Name: Soil microbial communities from Colorado Plateau, Green Butte sample - Light Crust, Colorado Plateau, Green Butte 2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3444
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Desert → Soil → Soil Microbial Communities From Four Geographically Distinct Crusts In The Colorado Plateau And Sonoran Desert

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038520	Metagenome / Metatranscriptome	165	Y
F083444	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
LCrCPGB2aDRAFT_0020032	F038520	N/A	MKHRKIKHGGSRAGAGRPHKYQGGETKLVRIPVVYVDKILRVVAYMDANEGQLPLEIAFATEEDFSLPGYNASRELPYPNFDRYNKRYRNSTFGENFHK*
LCrCPGB2aDRAFT_0020033	F083444	GAGG	MLNNMSEVFSCEQVALENTHLLPEYGKKVIYFVTAMQGESKIFLYIGFTINLRRKFKSHHRKIEFEFLNRIGYQVKISWIVFPDGIREKEGQAVQMCYIRAFEPKLNDDHNSFATVQAEELKKQFENWEQGRYEYLKKQIENWEQSGDDKDTIIKKIWEVCKQPFDDKNLILSPCTPQKTAV*