Scaffold Draft_c141270

Overview

Basic Information

• Taxon OID: 3300000052
• Scaffold ID: Draft_c141270
• Source Dataset Name: Coal bed methane well microbial communities from Alberta, Canada
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: McGill University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33614
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (81.36%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Biotransformation → Microbial Solubilization Of Coal → Unclassified → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Source Dataset Sampling Location

• Location Name: Alberta, Canada
• Coordinates
  • Lat. (^o): 52.119
  • Long. (^o): -113.78
  • Depth (m): 686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000220	Metagenome / Metatranscriptome	1544	Y
F008183	Metagenome / Metatranscriptome	337	Y
F017452	Metagenome	240	Y
F025940	Metagenome	199	Y
F029105	Metagenome	189	Y
F045714	Metagenome	152	Y
F058801	Metagenome	134	Y
F093233	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Draft_14127012	F025940	GAGG	MATAPVSRRLNLTRDQLAAFLTDQQQIRQFELLFSTVDELQVIVGTDFEYQADTAAATANEALAQLSALAQDTAVEDAVLNAKVQQALDAIPRLAQALDLLALAPVRNNIELAHDVNGILPYANQTASVRSNQVLTWLSM*
Draft_14127025	F008183	GGAG	MAAEGNEIDLVKYGVLWQKVQDMDKKMDKVERQLEELVALANKGRGGLWFGMTVVSGVSAVVGYLLNYWKH*
Draft_14127028	F000220	GGA	MSEEKPADILSKVLSYVDSPFKLFALILMAVFAFAGYFVWQNQELLMGAYKESKKMPSIVEDRVEDAAAHLFKTTNATIVAVFKVNPMFGTRVLYRAYTKEGRDKTNDGLDVGLFTQNAANNADVVRLMASEIPCGEYRSAQSEMGLWYIAKGVTYTCRISIPPDPSRFVGQITVGWDNEPADIQVARTMMEIAATMLSRSKQ*
Draft_14127032	F017452	AGGA	MIHTDEDDEFERIEHENAMKSGQPYHFDIFVSPSQRNQVLEEVAQELAKLPFGDTAASFAVFVRNMKK*
Draft_14127034	F058801	GGA	MKNSNFQTPRNFADCTWVQGYGREEPLWERVAGYVLAFAIGAGLAVLLVTWWSR*
Draft_14127044	F029105	AGG	MIEIKLQYYFDDVVSFDDGETVETVKVGYDYYPEEINYPHDHNYAEMFDVFVFDAKDNHITYDIPNDEYKRLMQEAKADFYQIQKDRNEI*
Draft_14127045	F093233	AGGAG	MRKQFEITEVYLQAEYFNHRLNCTIPAAWIAVFNNGHEVAICREWEASTPEDAQAYYEMHHAVYA*
Draft_1412706	F045714	AGG	MMQDIILTPRYSKNKKPVKVRKPSKPIDGINHRLLREQAEAEAQAAQAREIVPEDDALPTREELEAKATELGIRFDGRTKDKKLGQLIQDRLSENTGE*