Scaffold Draft_c141245

Overview

Basic Information

• Taxon OID: 3300000052
• Scaffold ID: Draft_c141245
• Source Dataset Name: Coal bed methane well microbial communities from Alberta, Canada
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: McGill University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12819
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Biotransformation → Microbial Solubilization Of Coal → Unclassified → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Source Dataset Sampling Location

• Location Name: Alberta, Canada
• Coordinates
  • Lat. (^o): 52.119
  • Long. (^o): -113.78
  • Depth (m): 686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000934	Metagenome / Metatranscriptome	828	Y
F002997	Metagenome / Metatranscriptome	514	Y
F022651	Metagenome / Metatranscriptome	213	Y

Sequences

Protein ID	Family	RBS	Sequence
Draft_1412451	F000934	GAG	MSLQTILSISESVGINDQRFVGQTVSRNQKITTSEILTVVPFAFELKPMNYLLYSQNRGVLNSLRIPDKALTQYINFGSTGWVNYIQYQGDMTPIQIGNCQWQTSSANKNLVLGSLPSIASSRYLFRAGDFVQVGLYSYIVTADVTRGPNPTVNVPVHRSLIDALTSTVACVAGEFGTTISMGGDTYT
Draft_1412456	F022651	N/A	MTVTVKDNSDLLNFLVTQADSRKDWFGFTQQRLTAVALAHDIARHHADKLTPAQAVQYALSLNEEIYHKIIKTTR*
Draft_1412459	F002997	N/A	MAIARFESIAINNLTFSKSDFGEGATVQTKWFDTRARVSDVANSVKIADKYRLYQELTQFTLNYTPNMKQIVDGQDQYSITWRGQDWRITDVREANDRMTVMFLCYRNDPVTAV*