NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Botbay15_c033980

Scaffold Botbay15_c033980


Overview

Basic Information
Taxon OID3300000051 Open in IMG/M
Scaffold IDBotbay15_c033980 Open in IMG/M
Source Dataset NamePorifera Cymbastela concentrica microbial communities from Botany Bay, Australia - sample 15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of New South Wales
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)810
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Porifera Cymbastela Concentrica → Porifera Cymbastela Concentrica Microbial Communities From Botany Bay Near Bare Island, Sydney, Australia

Source Dataset Sampling Location
Location NameBotany Bay, Sydney, Australia
CoordinatesLat. (o)-33.990833Long. (o)151.23195Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021777Metagenome / Metatranscriptome217N

Sequences

Protein IDFamilyRBSSequence
Botbay15_0339803F021777GAGGMKKLILLFLIIPLISCSEHQTNSWGSYATNKESKKQEFWFISYKSRDECIADMHWQFEGEEDDSKQRISNLHTKPYGCHFMSNNKWLSMYYFLIYK

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