Scaffold ARSoilOldRDRAFT_c018949

Overview

Basic Information

• Taxon OID: 3300000044
• Scaffold ID: ARSoilOldRDRAFT_c018949
• Source Dataset Name: Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Arabidopsis soil old
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 601
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina

Source Dataset Sampling Location

• Location Name: University of North Carolina, USA
• Coordinates
  • Lat. (^o): 35.9
  • Long. (^o): -79.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F082651	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
ARSoilOldRDRAFT_0189491	F082651	N/A	IGLFAGLALVSMTGLAAAGPFGKPEAPSLIVPVWSLTGECYPIDFNGIDIEWYAGRGVYQLTVTGVKPYMNMDVSLSHEAYNGRPAYWRTVVIGCVKNGLLMPLASPYYITMNLDQFVGSRGVEIVGASRKVRRDVPRS*