Scaffold ARcpr5yngRDRAFT_c011182

Overview

Basic Information

• Taxon OID: 3300000043
• Scaffold ID: ARcpr5yngRDRAFT_c011182
• Source Dataset Name: Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Arabidopsis cpr5 young rhizosphere
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 759
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina

Source Dataset Sampling Location

• Location Name: University of North Carolina, USA
• Coordinates
  • Lat. (^o): 35.9
  • Long. (^o): -79.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026839	Metagenome / Metatranscriptome	196	Y
F035467	Metagenome / Metatranscriptome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
ARcpr5yngRDRAFT_0111821	F035467	N/A	MSSAVNDNFLAMKNSIIFISALSLVAMMLASCSSVLAPDETATTGVTRQTEETTHERSAEDSVNSISGGHY*
ARcpr5yngRDRAFT_0111822	F026839	AGGA	MKTILMLIIGLMLAGCGSTGTHVRDRDAMDRHGYLVGHTAVDTICACP*