Scaffold ARSoilYngRDRAFT_c00066

Overview

Basic Information

• Taxon OID: 3300000042
• Scaffold ID: ARSoilYngRDRAFT_c00066
• Source Dataset Name: Arabidopsis rhizosphere soil microbial communities from the University of North Carolina - sample from Arabidopsis soil young
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 17268
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (18.52%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina

Source Dataset Sampling Location

• Location Name: USA: Bethesda, Maryland
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005305	Metagenome / Metatranscriptome	405	N
F007651	Metagenome / Metatranscriptome	347	N

Sequences

Protein ID	Family	RBS	Sequence
ARSoilYngRDRAFT_0006626	F005305	N/A	VKDLENELGPLIENFQNLLKDAKAKKIDSLREDEDLKKEFNKLSKDVIEPVMRKFESYLKSKDVSSSVNVRSEIVSGKNPSIQFSLHFKLTHESRYPNIKFSSSGEKISIQVDRLVTTGEVSQAMMQEYYDKEQITEEFINERLVSLIKSCFDKNWE*
ARSoilYngRDRAFT_000665	F007651	N/A	MSNDLNELIGRKDKLEGELNHELSADYNELMKKMSESFRDMHEDSVQYYKQKANEQLDKMEKNIQSGNKLSAINEKLLADTYLSLAITI*