NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold ICChiseqgaiiDRAFT_c0884094

Scaffold ICChiseqgaiiDRAFT_c0884094


Overview

Basic Information
Taxon OID3300000033 Open in IMG/M
Scaffold IDICChiseqgaiiDRAFT_c0884094 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Iowa, Continuous Corn soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2332
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m).1016
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033861Metagenome176N
F069837Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
ICChiseqgaiiDRAFT_08840943F033861AGGMQRGRSIICEECKLPRKSRRWFDVCDLCVRKLPKVQCGGCPTKVRRLQPDSPFCLPCSKRLSKVKIACEKCGLADYPRISYPGHCGKCYLNAIHRKNLKLRLRKFVCSACGLTKTSLPXAEMICKSCYEKRRTSKGRCTVTXCRGSILQQKIAALQKXQCRSPSPKATE*
ICChiseqgaiiDRAFT_08840944F069837N/ALQLCRXHNADRQAPKRLNKYIKSYDSPFPQNVRYFLALTTKLGLANCNVDERSVLVRDLLKYRAVGEYLQSHELPEMLSWQAIHEALPKARKRGQRGRAKVHFIRSGLLELGHHFLPEQFVPYQRERLMEKWLRSTPMMFVEHVTAFEKWASKGMLNPKLDINLNETPLAN
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.