Scaffold ICChiseqgaiiDRAFT_c0858285

Overview

Basic Information

• Taxon OID: 3300000033
• Scaffold ID: ICChiseqgaiiDRAFT_c0858285
• Source Dataset Name: Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2261
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Depth (m): .1016

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010775	Metagenome / Metatranscriptome	299	Y
F057507	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
ICChiseqgaiiDRAFT_08582853	F057507	GAG	MTPSTPTVTIHTTAVQQPVVLTHLTAFLLRARYAFLQTFHSAEHSDLDIFDQHQQLLIRCTIREDTTARRMSAPSVFPAQETLPEDLVTLIHALVQACTVTSE*
ICChiseqgaiiDRAFT_08582854	F010775	AGGA	MGRRLSLFSPTGVSLVETMVALVVIVVGLSALRHAFPTHLATEQQALEQVQATLLGKNQLEQLRLRGFSALATAPLATTPEPFVDSQQQAVDGPFRWQAEVYHEAEDLLAVHVRVVWPWPAQTHQVRLATYVSRH*