Scaffold Draft_c0041720

Overview

Basic Information

• Taxon OID: 3300000032
• Scaffold ID: Draft_c0041720
• Source Dataset Name: Oil sands microbial community from Northern Alberta which degrade Naphthaline
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: McGill University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25855
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (88.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin009 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Source Dataset Sampling Location

• Location Name: Syncrude tailings pond, Wood Buffalo, Alberta, Canada
• Coordinates
  • Lat. (^o): 57.02
  • Long. (^o): -111.55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055749	Metagenome / Metatranscriptome	138	N
F072352	Metagenome / Metatranscriptome	121	Y
F095523	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Draft_004172010	F095523	GGAGG	MGVSIPIEYLYLTVGLLVVAVIYIINNRNNTRLYNPEGPLFIKARKKEIPLLRVIDPGTNHARHVLGDKERDDDPVYAKDMWGLHADPAYIEGDASPERHPGGLLIYNISPNVTFPISPRNVLAQHTILRHRRDLPEFAELDFLSDRDLLVLLSSPADHLPHDAQIFTDNYKPTIVEIDESGQPVEVEMNAADLVERITAFKKYATTLPVEGGGFAYHEYFRNNPYGHSSQTTQRINYLFQKIADRKSAMADKLWTYGLIAIGLLGAVGVTIYIISLAAG*
Draft_004172036	F072352	GGAGG	MSSPKRAFADIKHAMTVYSLHECPNGCGEMLALDDGWQCPICYKYLGYRRGEQHP*
Draft_00417208	F055749	AGAAG	MNLIIAIAIGILTLIAVFSVIPVVGGSIDNAMPDVGDTSEWNTTNNPDLPSGASMWTQLGPLLVLAVLAMVIGLVIMYFRNAAG*