Scaffold Draft

Basic Information
Taxon OID	3300000032 Open in IMG/M
Scaffold ID	Draft_c0008280 Open in IMG/M
Source Dataset Name	Oil sands microbial community from Northern Alberta which degrade Naphthaline
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	McGill University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300000032 Open in IMG/M

Scaffold ID

Draft_c0008280 Open in IMG/M

Source Dataset Name

Oil sands microbial community from Northern Alberta which degrade Naphthaline

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

McGill University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7665
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (95.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

7665

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (95.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Source Dataset Ecosystem

Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Source Dataset Sampling Location
Location Name	Syncrude tailings pond, Wood Buffalo, Alberta, Canada
Coordinates	Lat. (^o)	57.02	Long. (^o)	-111.55	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Syncrude tailings pond, Wood Buffalo, Alberta, Canada

Coordinates

Lat. (^o)

57.02

Long. (^o)

-111.55

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003987	Metagenome / Metatranscriptome	458	Y
F004383	Metagenome / Metatranscriptome	440	Y
F005744	Metagenome / Metatranscriptome	391	Y
F031138	Metagenome / Metatranscriptome	183	Y
F042353	Metagenome / Metatranscriptome	158	Y
F043951	Metagenome / Metatranscriptome	155	N

Sequences

Protein ID	Family	RBS	Sequence
Draft_000828010	F031138	GAG	MTKRYTYVAPCATACKPGAGTDSQNDTFDRIIVAAAEHAAREAGLPGRADRMIACRSCGCETTADRICPDCAEALRVERAAALDEQCRVHRVRYVEDLPVSVLEEMQAEWGRC*
Draft_000828011	F004383	GGGGG	MACDCENPCRGCKGNGSECSMDPAECGHAVLPSSDNLLERAFMARIRAEEYREDLAALQREFDARPDVLDLKRRIERCEEERRTCIEQAKAAGVSKMGNYLLKIRTRKQRTVIPKLFFAKHGAEAFVECATIAIGKAEALLGKAALDDCCEVEVKEIGVSVEYERPEAGE*
Draft_000828012	F003987	GGAGG	MIPALPYGTYADSGVPAGAFYVAAFEDGDQTHHVGEYRIETLVRALRALQACGYDDVEIGSIERGGKTHLLLIGLDGEARFGDRQMGCIAVLPVGVD*
Draft_00082804	F042353	GAGG	METRTPPTTLTGDACRALERIVQDDLEHATVSSAMVLVEESGRIIINELVLRLDDGRMVTLMPLDIPAETAVDLRLDIYDDHLPGGHGWREATVAEDYAEELADLTQVWCPEPDTVEEARL*
Draft_00082806	F043951	GGTGG	MDPIGIGRPIEASLGPRYRCPVCGQKLWTIQAPWTGWQEWLRTADGRRHYKHRCNIMEDALIMFRRMFGQDW*
Draft_00082807	F005744	AGGAG	MDEMFEIIKAGAPDAPPEQALYRIQQIYPDGSGGRLIIDWEGLLRLHELIHDRIALEGYVCETCDTKGCYRPATWEIECRGAGVSGRLIYSCDEHCPDPAILSPYDDIRRVVEE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Draft_c0008280

Overview

Ecosystem & Geography

Associated Families

Sequences