Scaffold Draft_c0004069

Overview

Basic Information

• Taxon OID: 3300000032
• Scaffold ID: Draft_c0004069
• Source Dataset Name: Oil sands microbial community from Northern Alberta which degrade Naphthaline
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: McGill University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11639
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Source Dataset Sampling Location

• Location Name: Syncrude tailings pond, Wood Buffalo, Alberta, Canada
• Coordinates
  • Lat. (^o): 57.02
  • Long. (^o): -111.55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038290	Metagenome / Metatranscriptome	166	Y
F055836	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Draft_00040694	F038290	AGGAG	MNTKVIDPLEGLEGFSRLRIRAASRMVSPIRRFKNMVELSDWEDRILQKEQEIDAFCWMLAGGTAALLLPVGFLVLKG*
Draft_00040699	F055836	AGG	MGLIMILLRGPLLVALSACRLFKFNCIFTVYPGSQKDIDGYLPPGFKWAKHLASGKPFVAGVITTGNGLGRGLVLAVPNTVEQFKADRKLVGNIMKRLKFTKTVTGAKTIAVAGQGPRFFKSHFPYEQPFVYGLKGRVFSVVETVERVAEMHNLPRAGTTVAILGVGEIGEEIIRNLEEKGYRALGIDIKITETSIELCNEGMARLKQADLIVVQTPRGDDVVPYYENLKKSAILIDDSHPRITVKPGEVRFYKVAIGRAGVEFKPPLPGYEKYWIPGCVQESLVVAESGTADMSQEEFNRRSKELGFFAHMVDDR*