Scaffold WSSedB1B_c001885

Overview

Basic Information

• Taxon OID: 3300000030
• Scaffold ID: WSSedB1B_c001885
• Source Dataset Name: Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site B1 Bulk
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2800
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland → Wetland Microbial Communities From Twitchell Island In The Sacramento Delta

Source Dataset Sampling Location

• Location Name: Twitchell Island in the Sacramento/San Joaquin Delta, CA
• Coordinates
  • Lat. (^o): 38.10726
  • Long. (^o): -121.648538
  • Depth (m): 0 to .12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F086687	Metagenome	110	Y
F105437	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
WSSedB1B_0018853	F086687	GAG	LANQFDSSIKTETRIDLSSFSEPERRLLDKVQEFIDQYAPGKPPKDVIEKNADLWYKGLEIFGKKATELFVEIVPESFCCDELESWYFKLYFYNFMVDWQESLQKLRKMPKEQHDTLLCERREMSLLDKVFRLKRYPPPLLQEQSKNRSPQS*
WSSedB1B_0018854	F105437	GGAG	MKPSQLTKRIEELSEKLKPVKSDGVRLDFNSLTEPEQLIILKNMELDEKYQGKWTHEAIMENKEVILKLNHIAVSRVIELFTFTMPRAMMLDEIEQWFFKFNFNEFFRRWFECQKNLKKWTKQDREDFLRDVQLEPKNEDKLKVNV*