Scaffold CowRDRAFT01_c0132121

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold CowRDRAFT01_c0132121

Scaffold CowRDRAFT01_c0132121

Overview

Basic Information
Taxon OID	2236876025 Open in IMG/M
Scaffold ID	CowRDRAFT01_c0132121 Open in IMG/M
Source Dataset Name	Switchgrass-associated rumen community WFO
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	747
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Stomach → Unclassified → Switchgrass-Associated Bovine Rumen → Switchgrass-Associated Bovine Rumen Microbial Communities From Urbana, Illinois, Usa

Source Dataset Sampling Location
Location Name	Urbana
Coordinates	Lat. (^o)	40.1	Long. (^o)	-88.26	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F076635	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
CowRDRAFT01_01321212	F076635	AGGAGG	MIKRGSKIRVVKMDTAGGMDWQAKRLEGKVFTVRFIDSTGQIHLEETGLALIPGVDEYEIVK

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