Scaffold CowRDRAFT01_c0028316

Overview

Basic Information

• Taxon OID: 2236876025
• Scaffold ID: CowRDRAFT01_c0028316
• Source Dataset Name: Switchgrass-associated rumen community WFO
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1977
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Stomach → Unclassified → Switchgrass-Associated Bovine Rumen → Switchgrass-Associated Bovine Rumen Microbial Communities From Urbana, Illinois, Usa

Source Dataset Sampling Location

• Location Name: Urbana
• Coordinates
  • Lat. (^o): 40.1
  • Long. (^o): -88.26

Associated Families

Family	Category	Number of Sequences	3D Structure?
F076635	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
CowRDRAFT01_00283162	F076635	AGGAGG	MIKRGSKVRVVKMDTAGGMDWQAKRLEGKVFTVRFIDSAGMIHLEETGIALIPGVDQFEVVK